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Swiss Multi-Omics Center

Driving Innovation in Digitization and Integrative Analyses of Clinical Samples.
A Personalized Health initiative of the ETH domain.
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Generating clinical insights from Multi-Omics data

One entry point, multiple competencies.

Integrated Multi-Omic Data Interpretation

Integration, visualization, and analysis of omics data mapped onto biological networks and pathways

Data lineage tracking, data management, data sharing, secondary and tertiary analysis

Clinical Genomics

 

  • Clinical Grade Sequencing
    (ISO 15189 accredited)
  • Whole Genome Sequencing (WGS)
  • Whole Exome Sequencing (WES)
  • RNA Sequencing (RNASeq)
  • Fast-track genomic data analysis

Clinical Proteotyping

 

  • Quantitative Proteotyping

  • Proteotype analysis (DDA, DIA, PRM)
  • Post-translational modification analysis
  • Spatial proteotype analysis
  • Fast-track proteomic data analysis

Clinical Metabolomics

& Lipidomics

  • Small molecule analysis

  • Targeted metabolomics
  • Untargeted metabolomics
  • Lipidomics
  • Fast-track metabolomic data analysis

SMOC — designed to meet the needs of precision medicine.

"Each patient's individual molecular makeup and unique characteristics will be the basis for guiding the medical decisions and restoring health."

Unlocking the complexities of human health requires a comprehensive understanding of the intricate interplay between our genes, proteins, and metabolites. At SMOC, we utilize multi-omics approaches to examine the human body as a complex network of interacting molecules and gain an holistic picture of health and disease. Imagine having multiple vantage points to examine a complex landscape. Each "omics" layer provides a unique perspective, and by combining these layers, we create a high-resolution, multi-dimensional map of the human body to help us:

Understand disease complexity: Decipher why individuals with the same genetic mutation can experience different disease severity or treatment responses.

Identify new biomarkers: Discover novel molecular signatures for early disease detection and personalized risk assessment.

Develop targeted therapies: Design more precise and effective treatments tailored to an individual's unique molecular profile.

Predict treatment response: Anticipate how patients will respond to specific therapies, optimizing treatment strategies and minimizing adverse effects.

Multi-omics is not just about generating vast amounts of data; it's about extracting meaningful insights that translate into tangible benefits for patients. By integrating multi-omics data with clinical information, we bridge the gap between laboratory discoveries and clinical practice, paving the way for a new era of personalized medicine.

This is the driving force behind SMOC. We are committed to providing the expertise and resources needed to advance multi-omics research and transform how we understand, diagnose, and treat disease.


Features

Our Offer and Expertise

Getting the most of your clinical samples

Single entry point for integrated multi-omic analysis.

Molecular insights into clinical cohorts

Standardised and automated processing of large clinical cohorts.

Safe Data Storage and Exchange

Handling of sensitive clinical data according to established SPHN/BioMedIT guidelines.

Consultancy

We will find together the right strategy for digitizing and analyzing you clinical samples.

Feasibility study

Small scale studies for optimizing clinical cohort experimental design and generating proof of concept data.

Support with Grant and Paper writing

We will provide relevant text snippets supporting grants and publications.

We provide robust data for research and clinical insights

Clinical Stream

High quality molecular data on the DNA, RNA, Protein, Metabolite and Lipid level for gaining clinical insights

Exploratory Research Stream

Integration, visualization and analysis of omics data mapped onto biological networks and pathways

SPHN BioMedIT infrastructure integration

For data lineage tracking, secure data management, data sharing, secondary and tertiary analysis

SMOC - towards better informed treatment decisions based on molecular insights.

Highlights
Project RAINDROP Awarded Prestigious Horten ConPro Grant to Advance Rare Disease Diagnostics
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The ETH PHRT Swiss Multi-Omics Center and the University Children's Hospital Zurich are excited to announce that they have received a Horten Consortium Project for Clinical Translation (CONPRO) grant of 3 million CHF for their proposal "Rapid and Accurate INborn Disease Recognition via multi-Omics Profiling" (RAINDROP). The project aims to leverage multi-omics to enhance diagnostics of Inborn Errors of Metabolism. These rare genetic disorders can be life-threatening, especially in the newborn and early childhood periods, and often incur significant long-term complications. During the three-year project, an interdisciplinary team under the lead of Matthias Baumgartner, Sean Froese, Patrick Pedrioli, Nicola Zamboni, and Sandra Goetze will analyze a substantial number of patient samples from a biobank that have been collected over the past 30 years. By integrating genomic, transcriptomic, proteomic, and metabolomic data, the consortium aims to improve both the speed and accuracy of diagnoses while providing deeper insights into the underlying mechanisms of disease development.

We appreciate the generous support of the Helmut Horten Foundation to realize RAINDROP's translational potential and its importance in advancing precision medicine for children with rare genetic disorders.

Integrated multi-omics reveals anaplerotic rewiring in methylmalonyl-CoA mutase deficiency.
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In this pioneering collaboration with the Kinderspital Zurich, SMOC helped shed light on the inherited metabolic disease methylmalonic aciduria. Learn more in this article from Nature Metabolism.

Standardization and harmonization of distributed multi-center proteotype analysis supporting precision medicine studies
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In this international collaboration with 11 laboratories and Thermo Fisher Scientific, SMOC helped establish protocols for robust, sensitive, and reproducible data generation from clinical specimens. Learn more in this article from Nature Communications.

The Genome of Switzerland
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SMOC has started a large scale project to sequence 15'000 genomes representative of the Swiss population. This will allow for the creation a national reference dataset and enable Swiss participation in the European ‘1+ Million Genomes’ Initiative.

High-throughput identification of repurposable neuroactive drugs with potent anti-glioblastoma activity
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In this collaboration with the Weller and Snijder labs, SMOC performed proteomic and phosphoproteomic profiling to uncover that NADs alter glioblastoma neurophysiology and engage an anti-proliferative AP-1/BTG gene regulatory network. Learn more in this article from Nature Medicine.

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    Rapid Personalized Diagnosis of Sepsis in Children (RAPIDS)

    RAPIDS aims to improve sepsis diagnosis via multi-omics aproaches. Led by an international team of researchers from Switzerland (ETH Zurich, Kinderspital Zurich, and SMOC) and Australia (Queensland university), the proposal received funding to develop fast and accurate diagnostics to improve patient outcomes at reduced costs.

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    Project kick-off NDS SwissPedHealth

    SMOC is a proud partner of the recently launched pediatric personalized research network Switzerland (SwissPedHealth) – a Joint Pediatric National Data Stream (NDS).

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    Data for Health Symposium 2024 Joining Forces for a Swiss Health Research Data Ecosystem

    Check out the presentation Sandra Goetze gave at the SPHN/PHRT 2024 day.

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    Publication Ex vivo drug response heterogeneity reveals personalized therapeutic strategies for patients with multiple myeloma

    In this collaboration with the Manz and Snijder labs, SMOC helped elucidate determinants of multiple myeloma drug sensitivity, stratifying clinical responses and revealing the cellular and molecular factors regulating the disease. Learn more in this article from Nature Cancer.



Explore selected SMOC publications
People

SMOC Scientific Advisory Board

Susan Gasser

Prof. Dr. Susan Gasser

Tuuli Lappalainen

Prof. Dr. Tuuli Lappalainen

Elisa Oricchio

Prof. Dr. Elisa Oricchio

Stefan Tenzer

Prof. Dr. Stefan Tenzer

Aebersold Rudolf

Prof. Dr. Rudolf Aebersold

Didier Trono

Prof. Dr. Didier Trono


SMOC Team

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Dr. Sandra Goetze

SMOC Coordinator

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Prof. Dr. Bernd Wollscheid

Advisory Head of SMOC

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Dr. Patrick Pedrioli

SMOC Data Science Coordinator

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Dr. Audrey van Drogen

SMOC scientist

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Prof. Dr. Alexandre Reymond

Head, SMOC clinical genomics

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Dr. Katrin Männik

SMOC Ethical and Legal coordinator

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Prof. Dr. Jaques Fellay

Co-Head, SMOC Clinical Genomics

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Prof. Dr. Ioannis Xenarios

Co-head, SMOC Clinical Genomics

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Prof. Dr. Nicola Zamboni

Head, SMOC Clinical Metabolomics

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Dr. Kate Wolfer

SMOC scientist

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Dr. Lorenzo Talamanca

SMOC data scientist

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Dr. Jianbo Fu

SMOC data scientist

Join our team

If you are interested in joining our team, please get in touch.

Further information and pricing

Write to us
For formal offers & requests please contact us. We offer free consultancy.

Prices updated: January 2023

Download pricing

Clinical Genomics

WGS - 30x coverage

research (CHF/sample) industry (CHF/sample)
850 1300

WES - 70x coverage

research (CHF/sample) industry (CHF/sample)
1-50 samples 350 525
51-100 samples 320 480
>100 samples 260 390

RNA-seq - 50PE; 25M clusters

research (CHF/sample) industry (CHF/sample)
1-150 samples 200 300
151-300 samples 190 275
>300 samples 160 240

Clinical Proteomics

Standard data-independent acquisition (DIA)

research (CHF/sample) industry (CHF/sample)
1-20 samples 1000 2000
21-99 samples 800 1600
100-499 samples 600 1200
500-999 samples 500 1000
>1000 samples 400 800

Phospho-enrichment workflow and data-independent acquisition (DIA) or alternatively data-dependent acquisition scheme

research (CHF/sample) industry (CHF/sample)
1-20 samples 1200 2400
21-99 samples 1000 2000
100-499 samples 800 1600
500-999 samples 600 1200
>1000 samples 500 1000

Basic PRM-assay development including optimization and determination of LOD/LOQ

research (CHF/sample) industry (CHF/sample)
1-20 samples 5000 10000
21-99 samples 2500 5000

Clinical Metabolomics & Lipidomics

Metabolomics (LC-MS, untargeted)

research (CHF/sample and mode) industry (CHF/sample and mode)
110 220

HT Metabolomics (FIA-MS, untargeted)

research (CHF/sample and mode) industry (CHF/sample and mode)
30 60

Lipidomics (LC-MS, untargeted)

research (CHF/sample and mode) industry (CHF/sample and mode)
110 220

DEEP-track 'omic analysis

Please get in touch for a project based cost estimate

For an overview of supported samples and preparation requirements please have a look at this document:

Download sample requirements

Partnerships

The Swiss Multi-Omics Center (SMOC) plays a crucial role in advancing personalized health research in Switzerland. As a key project in the Personalized Health and Related Technologies (PHRT) initiative of the ETH domain, SMOC provides expertise in multi-omics data generation, analysis, and interpretation. This work is closely intertwined with the Swiss Personalized Health Network (SPHN), where SMOC contributes to building a robust platform for data-driven personalized health research.

To ensure secure data processing and sharing, SMOC leverages the BioMedIT and Data Coordination Center (DCC) infrastructure. This integration enables researchers to work with sensitive health data in a confidential and compliant manner.

Key Partners:

ETH PHRT: A strategic focus area of the ETH Domain encompassing ETHZ, EPFL, PSI, EMPA, Eawag, and WSL, with the goal of improving personalized health and precision medicine.

SPHN: A national initiative creating a secure platform for sharing and analyzing health data to drive personalized health research and innovation.

BioMedIT: A project providing a secure and high-performance computing environment for biomedical research, ensuring data security and compliance with ethical guidelines.

SwissPedHealth: SMOC collaborates with SwissPedHealth, a national initiative focused on improving children's health through data-driven research. This partnership enables SMOC to contribute its multi-omics expertise to pediatric research, furthering the understanding of childhood diseases and improving personalized healthcare for children.

TumorProfiler: As one of the node of TumorProfiler, SMOC provides tumor boards with fast-turnaround multi-omics data to support precision oncology.

ICPC: SMOC actively participates in the International Cancer Proteogenome Consortium (ICPC), a global initiative focused on advancing cancer research through proteogenomic analysis. This collaboration allows SMOC to contribute to international efforts in understanding cancer at the molecular level and developing new approaches for diagnosis and treatment.

Get in touch with us.

Do you want to be part of exciting discoveries? Let's work together!